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Page 15 of 39  Guideline


              •  A resistance test that shows no drug resistance may   •  The patient previously developed resistance to other
                 prevent having to switch unnecessarily to a second-line   InSTIs (e.g. RAL).
                 therapy.                                           •  The ART regimen may not contain any fully active NRTIs.
              •  A resistance test may permit recycling of some first-line   •  Accidental  exposure  to  sub-therapeutic  levels  of  DTG
                 NRTIs (e.g. TDF), if they are shown to be susceptible. This   (e.g. RIF-based therapy was commenced without the
                 is particularly useful if one wants to carry through TDF   DTG being given twice daily).
                 (or ABC) to a second-line DTG-based regimen.
              •  A resistance test will identify drug resistance that may be   Guide for interpreting a resistance test
                 important to identify should the patient require a third-
                 line ART in future.                                Current commercial tests have been licensed for specimens
                                                                    with a VL of at least 1000 ribonucleic acid (RNA) copies/mL.
              Dolutegravir-based therapy: Because resistance to DTG in   Nevertheless, many in-house assays can detect VLs of 500 RNA
              first-line therapy is extremely uncommon, we do not   copies/mL – 1000 RNA copies/mL. In general, most commercial
              recommend resistance testing unless the patient has been on   HIV resistance tests detect mutations if they are present in
              a  first-line  DTG-based  regimen  for  more  than  2  years,   > 10% – 20% of the HIV subpopulations in the sample.
              provided that they were not exposed to a scenario where a   °   Common pitfall:  Performing a resistance test in
              drug–drug interaction would have substantially decreased   patients with a low or undetectable VL. Commercial
              DTG concentrations (e.g. RIF-based TB therapy without      assays may not be successful in samples where the VL
              increasing DTG dosing frequency to 12 hourly).  (Other rare   is < 500 copies/mL – 1000 copies/mL.
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              indications for performing a resistance test before 2 years
              include patients who were infected with HIV whilst receiving   A key concept in interpreting resistance tests is  archived
              PrEP – see section 11). Because of the extreme rarity of first-line   resistance.  After reverse transcription from its RNA
              DTG-based  resistance  mutations,  we  suggest  switching  from  a   template, HIV inserts a DNA copy of itself into the host
              DTG-based first-line regimen to a second-line regimen only if   genome. Some of the cells that HIV infects are extremely
              resistance testing shows DTG resistance.              long-lived, and essentially provide an ‘archive’ of HIV
                                                                    variants over time.  Thus, mutations that are known to have
                                                                    been present at one point in time can be assumed to be present for
              Second-line therapy
                                                                    the lifetime of the patient,  even if they  are  not visible  on the
              Non-dolutegravir-containing regimens
                                                                    patient’s latest resistance test.
              •  Resistance testing is recommended upon failure of
                 a  second-line therapy. This enables clinicians to   A second key concept is that of the wild-type virus, which is
                 individualise a treatment regimen for a third-line ART.  the naturally occurring HIV strain free of drug resistance
              •  For PI-based regimens, sufficient resistance mutations to   mutations. In most cases, this form of the virus replicates
                 cause virological failure typically take at least 2 years to   more efficiently than viral strains that have acquired
                 develop; therefore, in most cases, we recommend only   resistance. Therefore, when drug pressure is removed, the
                 performing a resistance test after the patient has been on a   wild-type forms of the virus will predominate, even though
                 PI-based regimen for at least this duration. Exceptions   the resistant strains have been archived and can become
                 include exposure to sub-therapeutic PI drug levels as a   predominant again later if the drug pressure subsequently
                 result of drug–drug interactions (e.g. not doubling the dose   changes in ways favourable to these strains.
                 of LPV/r when using RIF-based TB treatment). Patients on   •  A prominent exception to this is the signature mutation of
                 PI-based therapy with a VL of 50  copies/mL – 500 copies/  EFV and NVP, namely K103N, which imposes no
                 mL pose a challenge as resistance testing is generally not   significant fitness cost on the virus. Even after these drugs
                 possible. Such patients should remain on the same regimen   are stopped, the K103N strains may persist at detectable
                 with 2–3 monthly VL testing. If the VL rises to > 500     levels for several years.
                 copies/mL, then resistance testing should be performed,   •  Resistance testing should therefore only be performed
                 whereas if the VL re-suppresses to < 50 copies/mL, then   when the patient is still taking his or her ART regimen, or
                 the patient may revert to 6–12 monthly VL testing.
                                                                      up to a maximum of 4 weeks after discontinuation (see
                                                                      worked examples in Box 1).
              Dolutegravir-based therapy: We do not recommend       •  The absence of any identified resistance mutations
              performing resistance testing for DTG-based second-line   implies that non-adherence is the cause of a raised VL.
              therapies within 2 years where at least one active NRTI is   •  This does not exclude the possibility of archived resistance,
              present. For instance, if the patient’s first-line NRTIs were   however, which may only become detectable once the
              FTC and TDF, and the patient was changed to 3TC and AZT,   patient is back on ART that suppresses the wild-type strain.
              then the strain of HIV can be assumed to be fully susceptible   •  Any significant drug resistance mutations identified by
              to AZT.
                                                                      resistance testing can be assumed to be present for the
                                                                      lifetime of the patient, even if subsequent resistance
              Scenarios in which to consider resistance testing when failing   testings fail to show these mutations (as a result of
              on a DTG-containing regimen include the following:      worsened adherence or an ART switch, for instance).


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